Aside

Info

Languages

🇫🇷 French (mother tongue)

🇺🇸 English (fluent - C1, IELTS)

🇮🇹 Italian (proficient - B2, CILS)

🇩🇪 German (beginner - B1, ZD)

Technical Skills

Main

Antoine Bichat

Mathematical Engineer - PhD Student in biostatistics

antoine.bichat@mines-nancy.org

Education

PhD

Enterome & LaMME

Paris area, France

2020 - 2018

Discovering multi-scale metagenomic signatures through hierarchical organization of species. Tutored by Dr Christophe Ambroise, Dr Mahendra Mariadassou and Mr Jonathan Plassais

Mathematics of Modelling Master’s degree

Sorbonne Université

Paris, France

2017 - 2016

  • Applied Mathematics for Biology and Medical Sciences
  • Data Science

Graduate Engineering School

Mines Nancy

Nancy, France

2017 - 2014

  • Mathematical engineering
  • Bioengineering

Classe Préparatoire aux Grandes Écoles

Lycée du Parc, MP*

Lyon, France

Professional Experience

Biostatistician intern

Nestlé Research Center

Lausanne, Switzerland

2017

  • Data analysis of microbiome 16S sequencing
  • Implementation of DADA2 pipeline for sample inference

Biostatistician intern

Enterome

Paris, France

2016

  • Data analysis of microbiome Illumina next-generation sequencing
  • Writing and automation of bioinformatics quality control report

Teaching Experience

Data Science Starter Program

École Polytechnique, 14h, continuing education

Paris area, France

2019

An Introduction to the Linear Model

AgroParisTech, 40h, engineering students

Paris, France

2019 - 2018

Visualization with R

Mines Nancy, 3h, engineering students

Nancy, France

2017

Scientific productions

Incorporating phylogenetic information in microbiome abundance studies has no effect on detection power and FDR control

Article submited in Frontiers in Microbiology

N/A

2019

Antoine Bichat, Jonathan Plassais, Christophe Ambroise and Mahendra Mariadassou

Quantifying the impact of tree choice in metagenomics differential abundance studies with R

Poster for UseR! 2019

Toulouse, France

2019

  • Winner of Biostatistics poster prize

Impact of tree choice in metagenomics differential abundance studies

Talk at SPMGD & JdS

Barcelona, Spain & Nancy, France

2019

Volunteer Work

During Engineering School

Mines Nancy

Nancy, France

2017 - 2014

  • Academic year-group representative
  • Student member of the Executive Board of Mines Nancy
  • President of the debating and conference club
  • Communication Officer for the recruitment forum of Mines Nancy

UDPS 69 (first aid association)

First aid worker, lifeguard

Lyon area, France

2014 - 2011